Metacrafter Registry

Datatypes

Sequence Read Archive accession (SRA, ENA, DDBJ)

ID sra_accession

DatatypeNot PIIidentifierDraft

This record is a draft: it has not been reviewed yet and may be incomplete or wrong. Do not rely on it for compliance decisions. Help improve it (see CONTRIBUTING.md).

Accession of an object in the sequence read archives of NCBI (SRA), EMBL-EBI (ENA) and DDBJ, which store raw data from high-throughput sequencing. The first letter is S, E or D after the archive that issued it, the second is R, and the third gives the kind of object, for example X for an experiment, R for a run and S for a sample. Digits follow. Studies and samples also have BioProject and BioSample accessions, which are separate datatypes.

Categories
Scientific
Countries
Global (not tied to a country)
Languages
Common to most languages
Bioregistry
insdc.sra
Quality
85/100 · missing: translation, detector coverage
Metacrafter rules
no detection rule yet
Supported by tools
no tool record lists this type yet

Regular expression

^[SED]R[APRSXZ]\d+$

Python re syntax.

Examples

ValueDescription
SRX000007454 sequencing of a paired-end library of HapMap individual NA18505 (experiment); Bioregistry example
SRR000001A sequencing run of that experiment
ERS368772ENA sample accession of BioSample SAMEA2397676
SAMEA2397676 invalidBioSample accession, not a read archive accession

Sources

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